HsaEX6028395 @ hg38
Exon Skipping
Gene
ENSG00000198793 | MTOR
Description
mechanistic target of rapamycin [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr1:11117004-11122126:-
Coord C1 exon
chr1:11121979-11122126
Coord A exon
chr1:11121246-11121368
Coord C2 exon
chr1:11117004-11117086
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACAGTTGTGTCCTGATGCAGATG
3' ss Score
7.48
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
CATCCAGAGATACGCTGTCATCCCTTTATCGACCAACTCGGGCCTCATTGGCTGGGTTCCCCACTGTGACACACTGCACGCCCTCATCCGGGACTACAGGGAGAAGAAGAAGATCCTTCTCAACATCGAGCATCGCATCATGTTGCGG
Seq A exon
ATGGCTCCGGACTATGACCACTTGACTCTGATGCAGAAGGTGGAGGTGTTTGAGCATGCCGTCAATAATACAGCTGGGGACGACCTGGCCAAGCTGCTGTGGCTGAAAAGCCCCAGCTCCGAG
Seq C2 exon
GTGTGGTTTGACCGAAGAACCAATTATACCCGTTCTTTAGCGGTCATGTCAATGGTTGGGTATATTTTAGGCCTGGGAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198793-'93-91,'93-86,94-91
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(19.5=100)
A:
PF0045422=PI3_PI4_kinase=FE(15.9=100)
C2:
PF0045422=PI3_PI4_kinase=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGATACGCTGTCATCCC
R:
TCTCCCAGGCCTAAAATATACCCA
Band lengths:
226-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains