BtaEX6068716 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015325 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr16:43385529-43387826:+
Coord C1 exon
chr16:43385529-43385676
Coord A exon
chr16:43386262-43386384
Coord C2 exon
chr16:43387744-43387826
Length
123 bp
Sequences
Splice sites
3' ss Seq
AGACTTGTGTCTTGGTGCAGATG
3' ss Score
6.99
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
CATCCAGAGATACGCTGTCATTCCATTATCAACCAACTCGGGCCTCATCGGCTGGGTCCCCCACTGTGACACACTGCACGCCCTCATCCGGGACTACAGGGAGAAAAAGAAGATCCTTCTCAACATTGAGCATCGCATCATGCTGCGG
Seq A exon
ATGGCTCCAGACTATGACCACCTAACTCTGATGCAGAAGGTCGAGGTGTTTGAGCACGCCGTCAACAACACAGCTGGGGACGACCTGGCCAAACTGCTGTGGCTGAAGAGCCCCAGCTCCGAG
Seq C2 exon
GTGTGGTTTGATCGAAGAACCAATTATACCCGCTCTTTAGCGGTCATGTCTATGGTTGGGTATATTTTGGGCCTGGGCGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015325-'62-66,'62-65,63-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(19.5=100)
A:
PF0045422=PI3_PI4_kinase=FE(15.9=100)
C2:
PF0045422=PI3_PI4_kinase=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGATACGCTGTCATTCCA
R:
TCGCCCAGGCCCAAAATATAC
Band lengths:
226-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]