DreEX0047964 @ danRer10
Exon Skipping
Gene
ENSDARG00000053196 | mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-2974]
Coordinates
chr8:46087217-46091427:-
Coord C1 exon
chr8:46091280-46091427
Coord A exon
chr8:46089861-46089983
Coord C2 exon
chr8:46087217-46087299
Length
123 bp
Sequences
Splice sites
3' ss Seq
AGTCTCCCCATTTGTTTCAGATG
3' ss Score
8.31
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
TATTCAGCGCTATGCTGTGATCCCGCTTTCCACCAACTCTGGCCTGATTGGCTGGGTTCCTCACTGTGACACGCTGCACGCACTGATTCGAGACTACAGAGAGAAGAAGAAGATCCTGCTCAACATTGAACATCGCATCATGCTCAGG
Seq A exon
ATGGCCCCTGACTATGACCATTTGACTCTAATGGAGAAGGTGGAAGTGTTTGAGCATGCAGTGAACAATACTGCAGGAGATGACCTGGCCAAACTGCTTTGGCTGAAGAGTCCCAGTTCAGAG
Seq C2 exon
GTCTGGTTTGACAGGAGGACCAACTACACACGCTCGCTAGCTGTTATGTCCATGGTTGGCTATATCTTAGGACTTGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053196-'53-53,'53-52,54-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(19.5=100)
A:
PF0045422=PI3_PI4_kinase=FE(15.9=100)
C2:
PF0045422=PI3_PI4_kinase=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGCTGTGATCCCGCTTT
R:
TCCAAGTCCTAAGATATAGCCAACCA
Band lengths:
218-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]