GgaEX6024070 @ galGal3
Exon Skipping
Gene
ENSGALG00000003339 | MTOR
Description
NA
Coordinates
chr21:4138820-4140123:-
Coord C1 exon
chr21:4139976-4140123
Coord A exon
chr21:4139167-4139289
Coord C2 exon
chr21:4138820-4138902
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATGTCACTTCTCATTTACAGATG
3' ss Score
10
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
CATCCAGAGATATGCTGTTATTCCACTGTCCACAAATTCAGGCTTAATAGGTTGGGTCCCCCACTGTGACACACTGCATGCCCTCATCCGCGACTACAGAGAGAAGAAAAAGATCCTGCTGAACATTGAACATCGCATCATGCTGAGG
Seq A exon
ATGGCTCCAGATTATGACCACCTGACTTTAATGCAGAAGGTAGAAGTATTTGAACATGCTGTCAATAACACAGCTGGTGATGACCTTGCCAAACTGCTGTGGTTGAAAAGTCCAAGCTCAGAG
Seq C2 exon
GTATGGTTTGACAGAAGAACAAACTACACTCGTTCACTAGCTGTGATGTCAATGGTTGGGTACATTCTGGGTCTTGGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339-'48-50,'48-49,49-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(19.5=100)
A:
PF0045422=PI3_PI4_kinase=FE(15.9=100)
C2:
PF0045422=PI3_PI4_kinase=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGATATGCTGTTATTCCACTGT
R:
TGTCCCCAAGACCCAGAATGT
Band lengths:
227-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]