MmuEX6097887 @ mm9
Exon Skipping
Gene
ENSMUSG00000028991 | Mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:MGI Symbol;Acc:MGI:1928394]
Coordinates
chr4:147919619-147921795:+
Coord C1 exon
chr4:147919619-147919766
Coord A exon
chr4:147920507-147920629
Coord C2 exon
chr4:147921713-147921795
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCTGATCTGATTCAGATG
3' ss Score
8.44
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
CATCCAGAGATACGCTGTCATCCCTCTGTCCACCAACTCGGGCCTCATTGGCTGGGTGCCCCACTGTGACACACTGCATGCCCTCATCCGGGACTACAGAGAGAAGAAGAAGATCCTGTTGAACATCGAGCATCGCATCATGCTGCGG
Seq A exon
ATGGCTCCTGACTATGACCACCTGACGTTGATGCAGAAGGTAGAGGTGTTTGAGCATGCTGTCAACAACACAGCTGGGGACGACCTGGCCAAGCTACTGTGGCTAAAAAGCCCCAGCTCGGAG
Seq C2 exon
GTGTGGTTTGACCGAAGAACCAACTATACCCGCTCCCTGGCCGTTATGTCGATGGTCGGATACATTTTAGGCCTTGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028991-'55-60,'55-59,57-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(19.5=100)
A:
PF0045422=PI3_PI4_kinase=FE(15.9=100)
C2:
PF0045422=PI3_PI4_kinase=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGATACGCTGTCATCCC
R:
CTGTCTCCAAGGCCTAAAATGT
Band lengths:
228-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: