RnoEX6024456 @ rn6
Exon Skipping
Gene
ENSRNOG00000009615 | Mtor
Description
mechanistic target of rapamycin kinase [Source:RGD Symbol;Acc:68371]
Coordinates
chr5:165361464-165364602:+
Coord C1 exon
chr5:165361464-165361611
Coord A exon
chr5:165362461-165362583
Coord C2 exon
chr5:165364520-165364602
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGGTTTGGTCCTGATTCAGATG
3' ss Score
6.3
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
CATCCAGAGATACGCCGTCATTCCTCTGTCCACCAACTCGGGCCTGATTGGCTGGGTGCCCCACTGTGACACGCTGCATGCCCTCATCCGGGACTACAGAGAGAAGAAGAAGATCCTGCTGAACATCGAGCACCGCATCATGCTGCGG
Seq A exon
ATGGCTCCTGACTATGACCACCTGACTCTGATGCAGAAGGTGGAGGTGTTTGAGCATGCTGTCAACAACACAGCCGGGGATGACCTGGCCAAGCTGCTGTGGCTGAAAAGCCCCAGCTCAGAG
Seq C2 exon
GTGTGGTTTGACCGAAGAACCAATTATACTCGCTCCCTGGCTGTCATGTCCATGGTTGGATACATTTTAGGCCTTGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009615-'67-72,'67-71,68-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(19.5=100)
A:
PF0045422=PI3_PI4_kinase=FE(15.9=100)
C2:
PF0045422=PI3_PI4_kinase=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGATACGCCGTCATTCC
R:
CTGTCTCCAAGGCCTAAAATGT
Band lengths:
228-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]