HsaALTD1043931-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000205517 | RGL3
Description
ral guanine nucleotide dissociation stimulator like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr19:11416836-11418573:-
Coord C1 exon
chr19:11418533-11418573
Coord A exon
chr19:11418507-11418532
Coord C2 exon
chr19:11416836-11417059
Length
26 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCACCTCTCCCCTCCTGCAGGCT
3' ss Score
11.62
Exon sequences
Seq C1 exon
AGGAAGGGAGGGGCTCGGAGGCGACCAGATGAGGCGACCAG
Seq A exon
GTAGAAAGGGGACTGGGGGCGGCCAG
Seq C2 exon
GCTCCCAGCCCCATTGCCAATACCTTCCTCCACTATCGAACCAGCAAGGTGAGGGTGCTGAGGGCAGCGCGCCTGGAGCGGCTGGTGGGAGAGTTGGTGTTTGGAGACCGTGAGCAGGACCCCAGCTTCATGCCCGCCTTCCTGGCCACCTACCGGACCTTTGTACCCACTGCCTGCCTGCTGGGCTTTCTGCTGCCACCAATGCCACCGCCCCCACCTCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205517-3-4,4-4,5-4-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.193
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061815=RasGEF_N=PU(52.3=74.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCAGATGAGGCGACCAG
R:
CCAAACACCAACTCTCCCACC
Band lengths:
124-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains