HsaALTD1043931-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000205517 | RGL3
Description
ral guanine nucleotide dissociation stimulator like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr19:11416836-11418573:-
Coord C1 exon
chr19:11418533-11418573
Coord A exon
chr19:11418426-11418532
Coord C2 exon
chr19:11416836-11417059
Length
107 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
CCACCTCTCCCCTCCTGCAGGCT
3' ss Score
11.62
Exon sequences
Seq C1 exon
AGGAAGGGAGGGGCTCGGAGGCGACCAGATGAGGCGACCAG
Seq A exon
GTAGAAAGGGGACTGGGGGCGGCCAGGTAAGTGGGGGGAGATCCAGGGAATGGGGTGGGGCCAGGCGATGGCCGCGCAGTTCCCGAGAGGAGCCTAGGGACAACTTG
Seq C2 exon
GCTCCCAGCCCCATTGCCAATACCTTCCTCCACTATCGAACCAGCAAGGTGAGGGTGCTGAGGGCAGCGCGCCTGGAGCGGCTGGTGGGAGAGTTGGTGTTTGGAGACCGTGAGCAGGACCCCAGCTTCATGCCCGCCTTCCTGGCCACCTACCGGACCTTTGTACCCACTGCCTGCCTGCTGGGCTTTCTGCTGCCACCAATGCCACCGCCCCCACCTCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205517-3-4,4-4,5-4-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.193
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061815=RasGEF_N=PU(52.3=74.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGAGGGGCTCGGAG
R:
CATTGGTGGCAGCAGAAAGC
Band lengths:
243-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains