HsaALTD1044078-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000206549 | PRSS50
Description
protease, serine 50 [Source:HGNC Symbol;Acc:HGNC:17910]
Coordinates
chr3:46717719-46720003:-
Coord C1 exon
chr3:46719944-46720003
Coord A exon
NA
Coord C2 exon
chr3:46717719-46718306
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
ATCTATCTGCTTAATTTCAGTTC
3' ss Score
7.12
Exon sequences
Seq C1 exon
GTTGACTCTGGAAGCTCCCTTGTCTGCCAAATGGACAAGACCTGGATTCAGATAGGAGTG
Seq A exon
NA
Seq C2 exon
TTCCTTGGGCAAAGCCCCACTGGAGGGGCTGGAGGGAAAGTAGGGTCACTTGGAGATCCTGGATGCCAGCCCCTGAGGTTTGGTCTTCATCTCACTGCGGGAGGGGTGACACCATGAGCCAGTCCAGGGCAATGGGCTGCGAGGGTGAGGAGGTCTGAGAATCGGCCGAGATTAAGTTGAGGGACTCCAGGAGACTGCTTGGACCAGCGGAGTGAGGAGAGGGAGGGGCCAAGGAGGGAAGTCAGCCGGGGCGTACCCAGCCCGGGAGGTATAAGGGAGGGCTGTCACTAGGGGCGCCCTTGCGGGTCAGACACCACGAGCGCCGTGGCGGGTGGCCCCTGGGGGGCGCCACGCAGGCGGGGCACTAGGAGCATCCCCACCCAGCTCACCAGAGGCCGCGGCATGCGGCCAACAGGGGGCGCCGTCGTGGGGGCGGCACTGGGAGCGCCTTCCGGAGAGACGCAGTCGGCTGCCACCCCGGGATGGGTCGCTGGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000206549-23-12,24-12-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.250
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAAATGGACAAGACCTGG
R:
CTCCCGCAGTGAGATGAAGAC
Band lengths:
139-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains