HsaINT1028245 @ hg38
Intron Retention
Gene
ENSG00000206549 | PRSS50
Description
protease, serine 50 [Source:HGNC Symbol;Acc:HGNC:17910]
Coordinates
chr3:46717719-46720003:-
Coord C1 exon
chr3:46719944-46720003
Coord A exon
chr3:46718307-46719943
Coord C2 exon
chr3:46717719-46718306
Length
1637 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
ATCTATCTGCTTAATTTCAGTTC
3' ss Score
7.12
Exon sequences
Seq C1 exon
GTTGACTCTGGAAGCTCCCTTGTCTGCCAAATGGACAAGACCTGGATTCAGATAGGAGTG
Seq A exon
GTAAGCTGGAGCTTTAGTTGTGGCCAGCGCCACTTCCCAGGTATCTACACCAGCACTGCCCACTTCAACCAGTGGATCAGGACTGAGGTTGCTAACATAAGGTTCATCAGTAGGGCTGGCCCTGCCTTCCTGAGCCCAGTTTTCCTCACTGGCTACATTCTACTGGGCTCCTTGAGCTCCCTGTGGCTCCTGTGAGCGGTGTTTCAAGGACAGTCCCTCCCAGAGGCTGCTTCTCCCTCCCCTCTGTTCTACCCTCAGAAGTGGAGACGAGAGGTTGCCCAGGATGGCAGGGCAGAGTGAGGGGGAGGGTCCGAGAGCCACTGTTACTTTCTGTTGTTCAATGAAGATGCTTTTGAACTTTGAGCCACTCAAGTGATCATCTTGCTTCCTGACTTCGGCCAGAGCCCTTCACAACCTTCCTAACCCCCAAGCAGTCCTGGCTGTTCTCTCAAGCTGAGCCTTCTCTGATAGCTTTATGCCATGTCTGTCTTGTGCTTGTTGTGTGACCCTGGGAGACTGTTCCCCTCCCTCTTCTTCCAAATGTGGGACTGCAGCTCCTTCTTAGTCATCCCAGCAATCCAGTAATCCCCAGGTCCCCATGGCCCTCCCCTGGGTATGTGACAGACACTTTCCCTCAGGCCTTCCTGCGAGGCCTGGCCTCTTCCCAAGTAACTCACCATGGCCAGATCACAGACCCACAACCATGGACCATGTTTCAGAACCCACTAGCTTCTCCCTACCCTTCATATCCTTCCATGGGTCTGCAGAGCCTGACCAATTCCTCCTCCCTCTTTGGCAGAGGTAGGTGATGTGGGGATAGGGCAGAGTGCCTGCCTGGGTAATGAATGTGTGAGATCACTATGCCCTGAGCTCCTGAGCTGCCTTGGTGACCTCCATTAGACTCTACAGCACGAGCAAGGCTACTGGAGGTAGCCAAGCTGAGGACAGAGCCTTGCCCCTGTGTGAGGAATGAGGGGCTGCTCAGACCTGGTGGTCCTCAGGTGCTGAGCAACCAGCCACCCCTATCCCTTAGGGCACCTGAAGGGTGTGATTTACTGTCTTTTCAGAGATTGGAGCATGGATTGGCCAGCTCAAGTGTGTATCCCAAGACCACAAGCCTGGACACATGTTAGAATATCCTGGCTTGATTTAACTTTCACCGTACCTTAGAAAAAAATATTTTCTTGTAGAGATGGGGGTGCTATGTTGCCCAGGCTGGACTCGAACTCCTGGGCTCAAGTGATCCTTCTGCCTCAGTTTCCTGAGTAGCTGAGAGTAGCTGGGACAGGTGCATGCCACAATGCTGGATCACCTTATCTTCTATTAGGCTAGAATTTTCCAACAGCTTTGAGTACCCCACATGACTTTTTAAATGTATTACCCTCCTGTGTCACTGAACCATCAATGTGTTCCCCAAATTGTAACATGCAAAGTGACCTCCTCATCCCACAGTGGCGCAATGGTAAGCACCAGTGTTCCTCTGTGGAGGGACCCTTTGCCTGCACTCTCTTTCCTAAGCAGATGGATCTGTGGGGCAAGGGCATCTGCTGAATGGGGTGGGGGTGGGGTGTAGTTGCTTAGAATGAAGCAGTCTTTCAAAATCATTATTTAAAACACATCTATCTGCTTAATTTCAG
Seq C2 exon
TTCCTTGGGCAAAGCCCCACTGGAGGGGCTGGAGGGAAAGTAGGGTCACTTGGAGATCCTGGATGCCAGCCCCTGAGGTTTGGTCTTCATCTCACTGCGGGAGGGGTGACACCATGAGCCAGTCCAGGGCAATGGGCTGCGAGGGTGAGGAGGTCTGAGAATCGGCCGAGATTAAGTTGAGGGACTCCAGGAGACTGCTTGGACCAGCGGAGTGAGGAGAGGGAGGGGCCAAGGAGGGAAGTCAGCCGGGGCGTACCCAGCCCGGGAGGTATAAGGGAGGGCTGTCACTAGGGGCGCCCTTGCGGGTCAGACACCACGAGCGCCGTGGCGGGTGGCCCCTGGGGGGCGCCACGCAGGCGGGGCACTAGGAGCATCCCCACCCAGCTCACCAGAGGCCGCGGCATGCGGCCAACAGGGGGCGCCGTCGTGGGGGCGGCACTGGGAGCGCCTTCCGGAGAGACGCAGTCGGCTGCCACCCCGGGATGGGTCGCTGGTGCCAGACCGTCGCGCGCGGGCAGCGCCCCCGGACGTCTGCCCCCTCCCGCGCCGGTGCCCTGCTGCTGCTGCTTCTGTTGCTGAGGTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000206549:ENST00000460241:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.250
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCTGGAAGCTCCCTTGT
R:
CAGCCCTCCCTTATACCTCCC
Band lengths:
342-1979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains