HsaALTD1044520-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000215148 | PRSS41
Description
protease, serine 41 [Source:HGNC Symbol;Acc:HGNC:30715]
Coordinates
chr16:2798562-2799124:+
Coord C1 exon
chr16:2798562-2798662
Coord A exon
NA
Coord C2 exon
chr16:2798959-2799124
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CGTCCGTCTGTCCATCCCAGAGG
3' ss Score
8.21
Exon sequences
Seq C1 exon
GCTACAGGCGGGACCGGGGGCAGCGAGGAGGCCGGGAGGTGGAGGCCGCGAGGGTCACTTCTTGTGTCCTGCAGAGTCGCAGGAGGAGGAGCTGTTGTCAG
Seq A exon
NA
Seq C2 exon
AGGCCTGCGGCCACCGGGAAATTCACGCGCTGGTGGCGGGCGGAGTGGAGTCCGCGCGCGGGCGCTGGCCATGGCAGGCCAGCCTGCGCCTGAGGAGACGCCACCGATGTGGAGGGAGCCTGCTCAGCCGCCGCTGGGTGCTCTCGGCTGCGCACTGCTTCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215148-2-0,3-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0008921=Trypsin=PU(18.5=78.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGGGTCACTTCTTGTGTC
R:
TTTTGGAAGCAGTGCGCAG
Band lengths:
220-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains