HsaEX1029711 @ hg38
Exon Skipping
Gene
ENSG00000215148 | PRSS41
Description
protease, serine 41 [Source:HGNC Symbol;Acc:HGNC:30715]
Coordinates
chr16:2798485-2799569:+
Coord C1 exon
chr16:2798485-2798662
Coord A exon
chr16:2798959-2799124
Coord C2 exon
chr16:2799286-2799569
Length
166 bp
Sequences
Splice sites
3' ss Seq
CGTCCGTCTGTCCATCCCAGAGG
3' ss Score
8.21
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATGGGCGCGCGCGGGGCGCTGCTGCTGGCGCTGCTGCTGGCTCGGGCTGGACTCGGGAAGCCGGGTGAGCTCGGGGCGCTACAGGCGGGACCGGGGGCAGCGAGGAGGCCGGGAGGTGGAGGCCGCGAGGGTCACTTCTTGTGTCCTGCAGAGTCGCAGGAGGAGGAGCTGTTGTCAG
Seq A exon
AGGCCTGCGGCCACCGGGAAATTCACGCGCTGGTGGCGGGCGGAGTGGAGTCCGCGCGCGGGCGCTGGCCATGGCAGGCCAGCCTGCGCCTGAGGAGACGCCACCGATGTGGAGGGAGCCTGCTCAGCCGCCGCTGGGTGCTCTCGGCTGCGCACTGCTTCCAAAA
Seq C2 exon
GCACTACTATCCCTCCGAGTGGACGGTCCAGCTGGGCGAGCTGACTTCCAGGCCAACTCCTTGGAACCTGCGGGCCTACAGCAGTCGTTACAAAGTGCAGGACATCATTGTGAACCCTGACGCACTTGGGGTTTTACGCAATGACATTGCCCTGCTGAGACTGGCCTCTTCTGTCACCTACAATGCGTACATCCAGCCCATTTGCATCGAGTCTTCCACCTTCAACTTCGTGCACCGGCCGGACTGCTGGGTGACCGGCTGGGGGTTAATCAGCCCCAGTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215148_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.5=78.6)
C2:
PF0008921=Trypsin=FE(39.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGAGGAGCTGTTGTCAG
R:
GTGCACGAAGTTGAAGGTGGA
Band lengths:
256-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains