RnoEX0070330 @ rn6
Exon Skipping
Gene
ENSRNOG00000047969 | Prss21
Description
serine protease 21 [Source:RGD Symbol;Acc:727870]
Coordinates
chr10:13214130-13216243:+
Coord C1 exon
chr10:13214130-13214938
Coord A exon
chr10:13215343-13215508
Coord C2 exon
chr10:13215960-13216243
Length
166 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGATCCTCCTCTCAGGAC
3' ss Score
10.67
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GGCACCTCATTTTCGTCACAAAGTCCTGTGAAGGAGTAAGTTCTTGGTTGATCCTAACAGGGATAGGCCTCAGAAGTGCTCATGAACCTTCCTGAGGGGACCTCTGGCTAAGTTTGATCCTGGAGGAAGTCGTGGGCAGGGGACAGAGGGCAACAGGGGAGGCAACCCGCATCCCCTGAGCTCAGATGACCCAAGGACTGCTCCGGTTGGTACACTAAGGTGGCTGCGCCATATCAACAGCCTTAATGGATGCCCTGGAAGACAGTGTTAGGGCACCATAGTCCCCAAAACAGCCCTGGGGCCTAGGGATCTGCGTCTTCTCCAGAGAGGGCGCGGGCCTGGCGTAGCAGGAAGTAAGAGGGGGCGCCAGGTGGCCGGAGAGGTGGCCATGAGCGCGCGGGGCAAGACGTTGGTGCCACTGCTGGTGGTTGTGGTGGCGGTGGAGGTGACCTTACAGTCAACCTCTTCGCATGTGAAACCCGTGGATCCCGAGAAACCCG
Seq A exon
GACCCTGCGGTCACAGGACCATCCCTTCACGTATAGTGGGTGGCGAAGAGGCCGAGCTTGGCCGCTGGCCTTGGCAAGGGAGCCTGCGTGTATGGGGCAACCACTTATGTGGCGCAACTTTGCTCAACCGCCGCTGGGTGCTTACAGCTGCCCACTGCTTCCAAAA
Seq C2 exon
GGACAATGATCCTTTCGACTGGACAGTCCAGTTTGGCGAGCTGACCTCCAGGCCGTCTCTCTGGAACCTACAGGCTTATTCCAACCGTTACCAAATAGAAGATATTTTCCTGAGCCCCAAGTACACGGAGCAGTTTCCCCATGACATAGCTCTGCTGAAGCTGTCATCGCCTGTCACCTACAGTAACTTCATCCAGCCCATCTGCCTCCTGAACTCCACATACAAGTTTGCGAACCGAACTGACTGCTGGGTGACCGGCTGGGGGGCTATTGGAGAGGATGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047969_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.6=78.6)
C2:
PF0008921=Trypsin=FE(40.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCGCATGTGAAACCCGT
R:
TGTGGAGTTCAGGAGGCAGAT
Band lengths:
258-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]