MmuEX6075557 @ mm9
Exon Skipping
Gene
ENSMUSG00000024116 | Prss21
Description
protease, serine, 21 [Source:MGI Symbol;Acc:MGI:1916698]
Coordinates
chr17:24005266-24006609:+
Coord C1 exon
chr17:24005266-24005292
Coord A exon
chr17:24005583-24005748
Coord C2 exon
chr17:24006326-24006609
Length
166 bp
Sequences
Splice sites
3' ss Seq
CGGTCTGATCCTCCTCACAGGGC
3' ss Score
10.04
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AACTGCAGGAACCCGACCTATTGTCAG
Seq A exon
GGCCCTGCGGTCACAGGACCATCCCTTCCCGTATAGTGGGTGGCGATGATGCTGAGCTTGGCCGCTGGCCGTGGCAAGGGAGCCTGCGTGTATGGGGCAACCACTTATGTGGCGCAACCTTGCTCAACCGCCGCTGGGTGCTTACAGCTGCCCACTGCTTCCAAAA
Seq C2 exon
GGATAACGATCCTTTTGACTGGACAGTCCAGTTTGGTGAGCTGACATCCAGGCCATCTCTCTGGAACCTACAGGCCTATTCCAACCGTTACCAAATAGAAGATATTTTCCTGAGCCCCAAGTACTCGGAGCAGTATCCCAATGACATAGCCCTGCTGAAGCTGTCATCTCCAGTCACCTACAATAACTTCATCCAGCCCATCTGCCTCCTGAACTCCACGTACAAGTTTGAGAACCGAACTGACTGCTGGGTGACCGGCTGGGGGGCTATTGGAGAAGATGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024116-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.6=78.6)
C2:
PF0008921=Trypsin=FE(40.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAGGAACCCGACCTATT
R:
TACGTGGAGTTCAGGAGGCAG
Band lengths:
248-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: