RnoEX0070331 @ rn6
Exon Skipping
Gene
ENSRNOG00000047969 | Prss21
Description
serine protease 21 [Source:RGD Symbol;Acc:727870]
Coordinates
chr10:13215343-13216243:+
Coord C1 exon
chr10:13215343-13215508
Coord A exon
chr10:13215752-13215866
Coord C2 exon
chr10:13215960-13216243
Length
115 bp
Sequences
Splice sites
3' ss Seq
GCTCTTCCTCTTTCTTCAAGTCC
3' ss Score
6.26
5' ss Seq
GGGGTAACC
5' ss Score
3.83
Exon sequences
Seq C1 exon
GACCCTGCGGTCACAGGACCATCCCTTCACGTATAGTGGGTGGCGAAGAGGCCGAGCTTGGCCGCTGGCCTTGGCAAGGGAGCCTGCGTGTATGGGGCAACCACTTATGTGGCGCAACTTTGCTCAACCGCCGCTGGGTGCTTACAGCTGCCCACTGCTTCCAAAA
Seq A exon
TCCTTCCCAAACATCCCCACACTAGTTTCCACGTTTGCTCAGCTCCTTTGGGGACTACACAAGGGGCTCGCCTTCTGTCTTTAGGACTGCGCCAACCGATGACAAGACCACTGGG
Seq C2 exon
GGACAATGATCCTTTCGACTGGACAGTCCAGTTTGGCGAGCTGACCTCCAGGCCGTCTCTCTGGAACCTACAGGCTTATTCCAACCGTTACCAAATAGAAGATATTTTCCTGAGCCCCAAGTACACGGAGCAGTTTCCCCATGACATAGCTCTGCTGAAGCTGTCATCGCCTGTCACCTACAGTAACTTCATCCAGCCCATCTGCCTCCTGAACTCCACATACAAGTTTGCGAACCGAACTGACTGCTGGGTGACCGGCTGGGGGGCTATTGGAGAGGATGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047969_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.750 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.6=78.6)
A:
PF0008921=Trypsin=PD(13.5=77.8)
C2:
PF0008921=Trypsin=FE(40.1=100)
Main Inclusion Isoform:
ENSRNOT00000073065fB11465
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGAGCCTGCGTGTATG
R:
AGCAGAGCTATGTCATGGGGA
Band lengths:
248-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]