RnoEX0070326 @ rn6
Exon Skipping
Gene
ENSRNOG00000047969 | Prss21
Description
serine protease 21 [Source:RGD Symbol;Acc:727870]
Coordinates
chr10:13214130-13215508:+
Coord C1 exon
chr10:13214130-13214938
Coord A exon
chr10:13215040-13215066
Coord C2 exon
chr10:13215343-13215508
Length
27 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTCCCTTCCACCCAGAAC
3' ss Score
8.11
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGCACCTCATTTTCGTCACAAAGTCCTGTGAAGGAGTAAGTTCTTGGTTGATCCTAACAGGGATAGGCCTCAGAAGTGCTCATGAACCTTCCTGAGGGGACCTCTGGCTAAGTTTGATCCTGGAGGAAGTCGTGGGCAGGGGACAGAGGGCAACAGGGGAGGCAACCCGCATCCCCTGAGCTCAGATGACCCAAGGACTGCTCCGGTTGGTACACTAAGGTGGCTGCGCCATATCAACAGCCTTAATGGATGCCCTGGAAGACAGTGTTAGGGCACCATAGTCCCCAAAACAGCCCTGGGGCCTAGGGATCTGCGTCTTCTCCAGAGAGGGCGCGGGCCTGGCGTAGCAGGAAGTAAGAGGGGGCGCCAGGTGGCCGGAGAGGTGGCCATGAGCGCGCGGGGCAAGACGTTGGTGCCACTGCTGGTGGTTGTGGTGGCGGTGGAGGTGACCTTACAGTCAACCTCTTCGCATGTGAAACCCGTGGATCCCGAGAAACCCG
Seq A exon
AACTGCAGGAAGCCAACCTATTGTCAG
Seq C2 exon
GACCCTGCGGTCACAGGACCATCCCTTCACGTATAGTGGGTGGCGAAGAGGCCGAGCTTGGCCGCTGGCCTTGGCAAGGGAGCCTGCGTGTATGGGGCAACCACTTATGTGGCGCAACTTTGCTCAACCGCCGCTGGGTGCTTACAGCTGCCCACTGCTTCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047969-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(18.6=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGGAGGTGACCTTACAGT
R:
TCTTCGCCACCCACTATACGT
Band lengths:
112-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]