MmuEX6075558 @ mm10
Exon Skipping
Gene
ENSMUSG00000024116 | Prss21
Description
protease, serine 21 [Source:MGI Symbol;Acc:MGI:1916698]
Coordinates
chr17:23868056-23868781:+
Coord C1 exon
chr17:23868056-23868197
Coord A exon
chr17:23868299-23868325
Coord C2 exon
chr17:23868616-23868781
Length
27 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTCCCTTCCACCCAGAAC
3' ss Score
8.92
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGAAGTAAGAGGGGGTGCCAGGTGGCAGGAGAGGTGGCCATGGGCGCGCGGGGCAAGACGTTGGTGCCACTGCTGGTGGTTGTGGCGACTGCGGCGATGGCCTTACAGTCAACCTATTTGCAGGTGGATCCTGAGAAACCCG
Seq A exon
AACTGCAGGAACCCGACCTATTGTCAG
Seq C2 exon
GGCCCTGCGGTCACAGGACCATCCCTTCCCGTATAGTGGGTGGCGATGATGCTGAGCTTGGCCGCTGGCCGTGGCAAGGGAGCCTGCGTGTATGGGGCAACCACTTATGTGGCGCAACCTTGCTCAACCGCCGCTGGGTGCTTACAGCTGCCCACTGCTTCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024116-'0-3,'0-1,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(18.6=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGATCCTGAGAAACCCG
R:
CATACACGCAGGCTCCCTTG
Band lengths:
115-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types