DreEX6018135 @ danRer10
Exon Skipping
Gene
ENSDARG00000052905 | zgc:165423
Description
zgc:165423 [Source:ZFIN;Acc:ZDB-GENE-070720-11]
Coordinates
chr3:39399128-39402348:+
Coord C1 exon
chr3:39399128-39399160
Coord A exon
chr3:39399260-39399422
Coord C2 exon
chr3:39402080-39402348
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTTTTACTTCTAATTTGAAGCAT
3' ss Score
5.63
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGTGTGACTGCCAGCCTACCCAGAGTCCCCCTG
Seq A exon
CATGTGGCAAAGCTCCTCTCAACACAAAGATTGTGGGGGGAACAAACGCATCTGCTGGCTCATGGCCATGGCAGGCCAGCCTTCATGAGAGTGGCTCTCACTTCTGTGGCGGTTCGCTCATCAGTGACCAGTGGATCCTGTCAGCCGCTCACTGCTTCCCCAG
Seq C2 exon
CAATCCTAATCCTTCAGACTACACTGTGTATCTTGGTCGGCAAAGTCAAGATCTGCCCAATCCGAATGAAGTGTCCAAATCGGTCTCTCAGGTCATTGTTCATCCATTATACCAAGGCTCAACCCATGACAATGACATGGCCCTGCTGCATCTCTCCTCACCGGTGACCTTCTCTAACTACATCCAGCCCGTCTGTCTGGCAGCAGATGGAAGCACATTCTACAATGACACAATGTGGATCACAGGCTGGGGAACCATTGAATCTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052905-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.055
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.1=80.0)
C2:
PF0008921=Trypsin=FE(39.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCAGCCTACCCAGAGTC
R:
AATGTGCTTCCATCTGCTGCC
Band lengths:
245-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]