MmuEX6014425 @ mm10
Exon Skipping
Gene
ENSMUSG00000070371 | Prss36
Description
protease, serine 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:127944642-127945873:-
Coord C1 exon
chr7:127945838-127945873
Coord A exon
chr7:127945237-127945399
Coord C2 exon
chr7:127944642-127944922
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTAGGGGGTCTCTATTGCAGACT
3' ss Score
6.66
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
TGGTCAGTCCTACCCAAGGAGAATTTGAAGACCTAG
Seq A exon
ACTGCGGCCGCCCTGAGCCCTCTTCCCGCATTGTGGGGGGCTCGGACGCTCATCCTGGCACTTGGCCATGGCAGGTGAGCCTGCATCAAGGTGGGGGCCACATCTGCGGGGGCTCCCTCATCGCCCCTTCCTGGGTCCTCTCCGCTGCTCACTGTTTCGTGAC
Seq C2 exon
GAATGGAACCTTGGAGCCCGCGGACGAATTGTCAGTTCTGCTGGGCGTGCACTCCCAGGACGGGCCCCTGGAAGGAGCGCACATGCGCTCAGTGGCCACCATCCTGATACCGGACAACTACAGCACAGTGGAACTGGGCGCAGACTTGGCTCTGCTGCGCCTGGCCTCGCCAGCCAAGCTGGGCCCCTCTGTGCGGCCGGTCTGCCTGCCTCGTGCCTCGCACCTCTTCGCTCACGGAACTGCCTGCTGGGCCACTGGTTGGGGGGACGTCCAGGAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371-'2-3,'2-2,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=0.291 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.3=80.0)
C2:
PF0008921=Trypsin=FE(39.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGGAGAATTTGAAGACCT
R:
TGAGCGAAGAGGTGCGAGG
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types