GgaEX1015079 @ galGal4
Exon Skipping
Gene
ENSGALG00000027497 | CFD
Description
complement factor D (adipsin) [Source:HGNC Symbol;Acc:HGNC:2771]
Coordinates
chr28:2751172-2751990:+
Coord C1 exon
chr28:2751172-2751267
Coord A exon
chr28:2751577-2751730
Coord C2 exon
chr28:2751846-2751990
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCCGCCCTGCATCAGCAC
3' ss Score
3.04
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CGTCCCCGGAGCGGCCGCTCACTGCAGCCATGGGGCCGTGCGCTGCTGCCGGGTCTGTCCTCGTCCTTCTGCTGCTGCTGGGGGCCGTGGTGGATG
Seq A exon
CACAGCCCCGGGGGCGGATCCTGGGGGGCTCGGAGGCGCAGCCCCACCGACGGCCCTACATGGCCTCCCTGCAGCTGGACGGGCAGCACATCTGTGGGGGATTCCTCATCGCCCCACAGTGGGTGCTGAGCGCCGCGCACTGCACCGAGCAGAT
Seq C2 exon
GGGGGATAAACGCTTCCAGGTGCTGCTGGGCGCCCATTCACTGACGGAACCGGAGCCCCACAAACGGCTCTACGACGTGCGGGCACAAATCGCCCACCCCGGCAGCAACATCCACAACAACCGGGACGACCTCCTGCTGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027497_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.2=86.5)
C2:
PF0008921=Trypsin=FE(21.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCACTGCAGCCATGG
R:
CTGGAGCAGCAGGAGGTCG
Band lengths:
226-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]