MmuEX6049645 @ mm10
Exon Skipping
Gene
ENSMUSG00000061780 | Cfd
Description
complement factor D (adipsin) [Source:MGI Symbol;Acc:MGI:87931]
Coordinates
chr10:79890853-79891850:+
Coord C1 exon
chr10:79890853-79890980
Coord A exon
chr10:79891456-79891612
Coord C2 exon
chr10:79891703-79891850
Length
157 bp
Sequences
Splice sites
3' ss Seq
AATACACCTACCCTCCTCAGCAG
3' ss Score
3.31
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
AGGGGCAGGAGGTAAGAGGCAGGAGTCCATAAAACAGCCCTGAGAGCCTGCTGGGTCAGTGCCTGCTGTCAGAATGCACAGCTCCGTGTACTTCGTGGCTCTGGTGATCCTGGGAGCGGCTGTATGTG
Seq A exon
CAGCACAGCCCCGAGGCCGGATTCTGGGTGGCCAGGAGGCCGCAGCCCATGCTCGGCCCTACATGGCTTCCGTGCAAGTGAACGGCACACACGTGTGCGGTGGCACCCTGCTGGACGAGCAGTGGGTGCTCAGTGCTGCACACTGCATGGATGGAGT
Seq C2 exon
GACGGATGACGACTCTGTGCAGGTGCTCCTGGGTGCCCACTCCCTGTCCGCCCCTGAACCCTACAAGCGATGGTATGATGTGCAGAGTGTAGTGCCTCACCCGGGCAGCCGACCTGACAGCCTTGAGGACGACCTCATTCTTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061780-'5-5,'5-2,12-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.1=84.9)
C2:
PF0008921=Trypsin=FE(21.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTAAGAGGCAGGAGTCC
R:
TCCTCAAGGCTGTCAGGTCG
Band lengths:
250-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types