MmuEX6049645 @ mm9
Exon Skipping
Gene
ENSMUSG00000061780 | Cfd
Description
complement factor D (adipsin) [Source:MGI Symbol;Acc:MGI:87931]
Coordinates
chr10:79353598-79354595:+
Coord C1 exon
chr10:79353598-79353725
Coord A exon
chr10:79354201-79354357
Coord C2 exon
chr10:79354448-79354595
Length
157 bp
Sequences
Splice sites
3' ss Seq
AATACACCTACCCTCCTCAGCAG
3' ss Score
3.31
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
AGGGGCAGGAGGTAAGAGGCAGGAGTCCATAAAACAGCCCTGAGAGCCTGCTGGGTCAGTGCCTGCTGTCAGAATGCACAGCTCCGTGTACTTCGTGGCTCTGGTGATCCTGGGAGCGGCTGTATGTG
Seq A exon
CAGCACAGCCCCGAGGCCGGATTCTGGGTGGCCAGGAGGCCGCAGCCCATGCTCGGCCCTACATGGCTTCCGTGCAAGTGAACGGCACACACGTGTGCGGTGGCACCCTGCTGGACGAGCAGTGGGTGCTCAGTGCTGCACACTGCATGGATGGAGT
Seq C2 exon
GACGGATGACGACTCTGTGCAGGTGCTCCTGGGTGCCCACTCCCTGTCCGCCCCTGAACCCTACAAGCGATGGTATGATGTGCAGAGTGTAGTGCCTCACCCGGGCAGCCGACCTGACAGCCTTGAGGACGACCTCATTCTTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061780-'0-2,'0-0,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.1=84.9)
C2:
PF0008921=Trypsin=FE(21.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTAAGAGGCAGGAGTCC
R:
TCCTCAAGGCTGTCAGGTCG
Band lengths:
250-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: