BtaEX6040165 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000048122 | CFD
Description
Bos taurus complement factor D (adipsin) (CFD), mRNA. [Source:RefSeq mRNA;Acc:NM_001034255]
Coordinates
chr7:45030310-45031402:+
Coord C1 exon
chr7:45030310-45030391
Coord A exon
chr7:45031012-45031168
Coord C2 exon
chr7:45031258-45031402
Length
157 bp
Sequences
Splice sites
3' ss Seq
GCTGACCTGCCTACTTCTAGCGG
3' ss Score
6.15
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
Exon sequences
Seq C1 exon
CAGTGTCAAGTCTACGGAGGCATCATGGCAGACAGATCCCTGCACCTGGTGGTTCTGATCCTCCTCGGGACGGCCCTGTGTG
Seq A exon
CGGCACAGCCCCGTGGCCGGATCCTGCGTGGCCAGGAGGCTCCATCCCACTCCCGGCCCTACATGGCATCCGTGCAGGTGAATGGCAAGCACGTGTGCGGAGGCTTCCTGATAGCAGAGCAGTGGGTGATGAGCGCAGCGCACTGCCTGGAGGACGT
Seq C2 exon
GGCCGATGGGAAGGTGCAGGTCCTCCTGGGCGCGCACTCCCTGTCGCAGCCGGAGCCCTCCAAGCGCCTGTACGACGTGCTCCGCGTAGTGCCCCACCCGGGCAGCCGGACAGAGACCATAGACCACGACCTACTCCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048122-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.132 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.2=84.9)
C2:
PF0008921=Trypsin=FE(21.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTCAAGTCTACGGAGGCA
R:
CTGCAGCAGGAGTAGGTCGT
Band lengths:
226-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]