RnoEX0020627 @ rn6
Exon Skipping
Gene
ENSRNOG00000033564 | Cfd
Description
complement factor D [Source:RGD Symbol;Acc:2498]
Coordinates
chr7:12634998-12635943:-
Coord C1 exon
chr7:12635885-12635943
Coord A exon
chr7:12635236-12635392
Coord C2 exon
chr7:12634998-12635145
Length
157 bp
Sequences
Splice sites
3' ss Seq
CACCCCCTCCCGCATCTCAGTTG
3' ss Score
6.38
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
CAAAATGCACAGCTCCGTGTACCTCGTGGCTCTGGTGGTCCTGGAGGCGGCTGTATGTG
Seq A exon
TTGCGCAGCCCCGAGGTCGGATTCTGGGTGGCCAGGAGGCCATGGCCCATGCTCGGCCCTACATGGCTTCAGTGCAAGTGAATGGCACGCACGTGTGCGGTGGCACCCTGGTGGATGAGCAGTGGGTGCTGAGCGCCGCGCACTGCATGGATGGAGT
Seq C2 exon
GACCAAGGATGAGGTTGTGCAGGTGCTCCTGGGTGCCCACTCCCTGTCCAGTCCTGAACCCTACAAGCATTTGTATGATGTGCAAAGTGTAGTGCTTCACCCGGGCAGCCGGCCTGACAGCGTTGAGGACGACCTCATGCTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033564_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.1=84.9)
C2:
PF0008921=Trypsin=FE(21.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCACAGCTCCGTGTACC
R:
TAAAGAGCATGAGGTCGTCCT
Band lengths:
203-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]