HsaEX6091399 @ hg19
Exon Skipping
Gene
ENSG00000197766 | CFD
Description
complement factor D (adipsin) [Source:HGNC Symbol;Acc:2771]
Coordinates
chr19:859665-861005:+
Coord C1 exon
chr19:859665-859744
Coord A exon
chr19:860617-860773
Coord C2 exon
chr19:860861-861005
Length
157 bp
Sequences
Splice sites
3' ss Seq
ACGCGCCCGCCCACCCACAGCGG
3' ss Score
7.13
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTGTCTCAGCCACAGCGGCTTCACCATGCACAGCTGGGAGCGCCTGGCAGTTCTGGTCCTCCTAGGAGCGGCCGCCTGCG
Seq A exon
CGGCGCCGCCCCGTGGTCGGATCCTGGGCGGCAGAGAGGCCGAGGCGCACGCGCGGCCCTACATGGCGTCGGTGCAGCTGAACGGCGCGCACCTGTGCGGCGGCGTCCTGGTGGCGGAGCAGTGGGTGCTGAGCGCGGCGCACTGCCTGGAGGACGC
Seq C2 exon
GGCCGACGGGAAGGTGCAGGTTCTCCTGGGCGCGCACTCCCTGTCGCAGCCGGAGCCCTCCAAGCGCCTGTACGACGTGCTCCGCGCAGTGCCCCACCCGGACAGCCAGCCCGACACCATCGACCACGACCTCCTGCTGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197766-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.204
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.2=84.9)
C2:
PF0008921=Trypsin=FE(21.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTCAGCCACAGCGG
R:
CTGTAGCAGCAGGAGGTCGT
Band lengths:
225-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)