HsaEX6091399 @ hg38
Exon Skipping
Gene
ENSG00000197766 | CFD
Description
complement factor D [Source:HGNC Symbol;Acc:HGNC:2771]
Coordinates
chr19:859643-861005:+
Coord C1 exon
chr19:859643-859744
Coord A exon
chr19:860617-860773
Coord C2 exon
chr19:860861-861005
Length
157 bp
Sequences
Splice sites
3' ss Seq
ACGCGCCCGCCCACCCACAGCGG
3' ss Score
7.13
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CCCCAGGGCCCTGCCTGGGTCAGTGTCTCAGCCACAGCGGCTTCACCATGCACAGCTGGGAGCGCCTGGCAGTTCTGGTCCTCCTAGGAGCGGCCGCCTGCG
Seq A exon
CGGCGCCGCCCCGTGGTCGGATCCTGGGCGGCAGAGAGGCCGAGGCGCACGCGCGGCCCTACATGGCGTCGGTGCAGCTGAACGGCGCGCACCTGTGCGGCGGCGTCCTGGTGGCGGAGCAGTGGGTGCTGAGCGCGGCGCACTGCCTGGAGGACGC
Seq C2 exon
GGCCGACGGGAAGGTGCAGGTTCTCCTGGGCGCGCACTCCCTGTCGCAGCCGGAGCCCTCCAAGCGCCTGTACGACGTGCTCCGCGCAGTGCCCCACCCGGACAGCCAGCCCGACACCATCGACCACGACCTCCTGCTGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197766-'0-1,'0-0,5-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.163
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.2=84.9)
C2:
PF0008921=Trypsin=FE(21.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTGGGTCAGTGTCTCAG
R:
CTGTAGCAGCAGGAGGTCGT
Band lengths:
237-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains