DreEX6060665 @ danRer10
Exon Skipping
Gene
ENSDARG00000039579 | cfd
Description
complement factor D (adipsin) [Source:ZFIN;Acc:ZDB-GENE-050522-411]
Coordinates
chr13:13550689-13551331:+
Coord C1 exon
chr13:13550689-13550767
Coord A exon
chr13:13550884-13551028
Coord C2 exon
chr13:13551190-13551331
Length
145 bp
Sequences
Splice sites
3' ss Seq
GTTATTACGTGTATGTGCAGGTG
3' ss Score
5.99
5' ss Seq
TGGGTATGA
5' ss Score
5.85
Exon sequences
Seq C1 exon
TCTTGAAGTAGACAACAATTGTTCACAATGAACAGGCTGATTTTCTTCTCTGTGCTGTTCTATGCAGCATTTCATACTG
Seq A exon
GTGACTGTATCACGGGAGGGCAAGAGGCTAAAGCACACTCTCGCCCGTACATGGCTTCAGTTCAGTGGAATGGAAAACATGAATGTGGTGGCTTTCTGATCTCCAGTCAGTGGGTCATGAGTGCTGCACATTGCTTTCAGGATGG
Seq C2 exon
GAGGACATCTGGTGTTAAGGTTGTTTTGGGTGCTCACTCGTTGTCTGGAGCCGAGGACACAAAGCAAACTTTTGATGCTGAAGTATACAACCATCCTGATTTCAGCATTAGCAACTATGACAATGACATTGCCCTGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039579-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.2=91.8)
C2:
PF0008921=Trypsin=FE(21.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGAAGTAGACAACAATTGTTCAC
R:
AATCAGGGCAATGTCATTGTCA
Band lengths:
218-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]