BtaEX0028702 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037397 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr25:27499353-27500645:-
Coord C1 exon
chr25:27500610-27500645
Coord A exon
chr25:27500069-27500231
Coord C2 exon
chr25:27499353-27499633
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTCCACGGTACCCCTTGCAGACT
3' ss Score
7.25
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTCTCAGTCCTACTCAAGAAGAACCTGAAGATCTGG
Seq A exon
ACTGCGGTCGCCCCAAGCCCTCTGCCCGAATCGTGGGGGGCTCCGACTCTCAGCCGGGCACCTGGCCGTGGCAGGTGAGCCTGCATCATGGCGGGGGCCACATCTGCGGGGGCTCCCTCATCGCCCCTTCCTGGGTCCTCTCGGCTGCTCACTGTTTCGTGAC
Seq C2 exon
GAACGGGACCTTGGAGCCCGCGGCCGAGTGGTCGGTGGTACTGGGCGTGCACTCGCAGGACGGGCCCCTGGACGGCGCGCACGTCCGCGCGGTGGCCGCCATCCTGGTGCCGGACAACTACAGCAGCGTGGAACGGGGCGCCGACGTGGCCCTGCTGCGCCTGGCCTCGCCCGCCAGGTTGGGCCCCTCCGTGCGGCCCGTCTGCCTGCCCCGAGCCTCGCACCGCTTTGCTCAGGGCACCGCCTGCTGGGCCACCGGCTGGGGGGACGTCCAGGAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037397-'2-4,'2-3,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.327 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.3=80.0)
C2:
PF0008921=Trypsin=FE(39.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAAGAAGAACCTGAAGATCTGG
R:
CAAAGCGGTGCGAGGCTC
Band lengths:
255-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development