DreEX6094953 @ danRer10
Exon Skipping
Gene
ENSDARG00000062758 | CR352265.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1QV82]
Coordinates
chr24:21671268-21673826:-
Coord C1 exon
chr24:21673707-21673826
Coord A exon
chr24:21673439-21673622
Coord C2 exon
chr24:21671268-21671539
Length
184 bp
Sequences
Splice sites
3' ss Seq
TTTTTATCCTCCAAATGCAGGTT
3' ss Score
8.4
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
Exon sequences
Seq C1 exon
TTTCAAAAGGATGCTCCCCCTCCTCCTTCAAATGTGCCAGTGGAAAGTGCTTAAATAAGATGAATCCAGAGTGTGACGGCATCAAAGATTGCAAAGACGGTTCTGATGAGTTACGTTGTG
Seq A exon
GTTGTGGCACGAGGCCCAGGAAGCGGGCGAAGATTGTGGGTGGCACAGATGCGCAGGCAGGCTCATGGCCGTGGCAGGTCAGCCTTCAGATGGAGCGGTATGGTCATGTGTGTGGAGCTTCTCTGGTGGCCAGTCGCTGGCTCGTGTCTGCTGCTCACTGCTTTCAGGACTCTGATGCCATCAA
Seq C2 exon
GTACTCTGATGCGCGCTCGTGGAGGGCCTACATGGGAATGCGAGTGATGAACTCAGTCAGTAACGCAGCAGCGACCAGACAAATCCGCCGCATCGTCCTGCATTCGCAATACGATCAGTTTACCTCAGACTATGACATTGCCCTGCTGGAACTGAGCGCTCCAGTGTTTTTCAATGAGCTGGTCCAGCCGGTCTGTGTACCGGCCCCATCCCACGTCTTCACCTCCGGAACCAGCTGCTTCGTCACTGGATGGGGAGTCCTGACTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062758-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.7)
A:
PF0008921=Trypsin=PU(21.4=80.6)
C2:
PF0008921=Trypsin=FE(38.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCTCCTTCAAATGTGCC
R:
GTTCCAGCAGGGCAATGTCAT
Band lengths:
255-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]