GgaEX1055673 @ galGal3
Exon Skipping
Gene
ENSGALG00000001331 | F1NLW7_CHICK
Description
NA
Coordinates
chr24:1606390-1607740:+
Coord C1 exon
chr24:1606390-1606518
Coord A exon
chr24:1606883-1607069
Coord C2 exon
chr24:1607466-1607740
Length
187 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCTTCCTCACCCCAGACT
3' ss Score
8.99
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
CAGCCCAGTCAACAGTTGCCTGCAAGAGCTACACGTACAAATGCCGCAATGGGCTCTGCATCAGCAAGCAGAACCCGGAGTGTGATGGGCAGAAGGACTGCGAAGACAATTCTGATGAGGACAATTGCA
Seq A exon
ACTGTGGGACCCGCTCCTACATTAAGAAATCACGGATCGTCGGTGGGCAGAACTCAGATGTGGGAGAGTGGCCGTGGCAGGTCAGCCTCCATGCCAAGAGCCAGGGCCACGTCTGTGGAGCTTCACTCATCTCAGAGACCTGGCTGGTGTCAGCAGCACATTGCTTCCTGGAGCTGCAAGGCATCCG
Seq C2 exon
CTACTCAGACGCCAGCCTGTGGACAGCCTACCTGGGCCTGACCAACCAAAGCAAACGCAACGATGCCAACGTGCAAATGAAGCAAATCAAGCGCATCATCTCCCACCGTTCCTTCAATGACTACACCTACGACTATGATATTGCTGTGATAGAGCTGCAGAGCCCCGTCACCTTCTCCGCTGTCGTCCAGCCCATCTGCCTGCCCGATTCTACGCACAACTTCCCCGTGGGCAAAGACCTGTGGGTGACCGGATGGGGAGCGACCGTGGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001331-'18-26,'18-24,19-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=86.4)
A:
PF0008921=Trypsin=PU(21.3=79.4)
C2:
PF0008921=Trypsin=FE(39.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAATGCCGCAATGGGCTC
R:
GCTCTGCAGCTCTATCACAGC
Band lengths:
257-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]