DreEX6084751 @ danRer10
Exon Skipping
Gene
ENSDARG00000044655 | st14b
Description
suppression of tumorigenicity 14 (colon carcinoma) b [Source:ZFIN;Acc:ZDB-GENE-061103-613]
Coordinates
chr21:25242937-25245902:-
Coord C1 exon
chr21:25245780-25245902
Coord A exon
chr21:25243286-25243469
Coord C2 exon
chr21:25242937-25243208
Length
184 bp
Sequences
Splice sites
3' ss Seq
ATGTTTATGTTATTTTGTAGAAT
3' ss Score
9.19
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CCATAGCTGTTCACTGCTCCGATTCCACCTATAAGTGCAAGAATAAGCAGTGCATTAGCAAGCTGAACCCCATGTGTGATGGAGAGACTGACTGTGTGGACGGTTCAGATGAAGCCGAGTGTA
Seq A exon
AATGTGGGAAGAAGCCTCACAAGTCCAGTCGTATTGTCGGTGGAAAAGACTCAGATGAGGGAGAATGGCCCTGGCAGGTCAGCCTCCACATGAAGACGCAAGGTCATGTGTGTGGTGCGTCTGTTATCAGTAACAGCTGGCTGGTCACTGCTGCTCACTGCGTGCAAGATAATGATCAATTCAG
Seq C2 exon
ATATTCACAGGCTGACCAGTGGGAGGTCTATCTAGGCCTACACAACCAGGGCGAGACTAGTAAATCTACACAAAGAAGTGTGTTGCGCATCATTCCTCACCCTCAGTATGATCACTCGAGCTACGACAATGACATCGCTCTAATGGAGCTGGACAGTCCTGTGACTCTGAATCAGAACATCTGGCCCATCTGCTTACCTGATCCCACACATTACTTCCCAGCCGGAAAATCTGTATGGATCACTGGCTGGGGCAAGTTAAGAGAGGGAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044655-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.145 C2=0.022
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.5)
A:
PF0008921=Trypsin=PU(21.4=80.6)
C2:
PF0008921=Trypsin=FE(38.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGTTCAGATGAAGCCGAG
R:
GGCTGGGAAGTAATGTGTGGG
Band lengths:
248-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]