RnoEX0086372 @ rn6
Exon Skipping
Gene
ENSRNOG00000005903 | St14
Description
suppression of tumorigenicity 14 [Source:RGD Symbol;Acc:69288]
Coordinates
chr8:32241499-32244230:-
Coord C1 exon
chr8:32244108-32244230
Coord A exon
chr8:32243405-32243484
Coord C2 exon
chr8:32241499-32241773
Length
80 bp
Sequences
Splice sites
3' ss Seq
GTTCTCTGTCCCCTCTCCAGACT
3' ss Score
9.2
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TGAATGCCGTCTCTTGCACCAAATATACCTACCGCTGCCAAAATGGCCTCTGTCTGAACAAGGGCAACCCTGAGTGTGATGGGAAGAAGGACTGCAGCGATGGCTCGGATGAGAAAAACTGTG
Seq A exon
ACTGTGGGCTGCGATCCTTTACCAAACAGGCTCGAGTGGTTGGTGGCACGAATGCGGACGAGGGCGAGTGGCCCTGGCAG
Seq C2 exon
GTACTCAGACCACACCATGTGGACAGCCTTCCTCGGTCTGCTGGACCAGAGCAAGCGCAGTGCCTCTGGGGTACAGGAGCACAAGCTCAAACGTATCATCACTCACCCTTCCTTTAATGACTTTACCTTCGACTATGACATTGCCTTGCTGGAGCTGGAGAAGCCGGCAGAGTACAGCACTGTCGTGCGCCCCATCTGCCTGCCTGATAATACCCATGTCTTTCCTGCCGGCAAAGCCATCTGGGTCACAGGCTGGGGCCACACGAAAGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005903-'21-16,'21-15,22-16
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.5)
A:
PF0008921=Trypsin=PU(21.3=79.4)
C2:
PF0008921=Trypsin=FE(39.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATGGCTCGGATGAGAAAA
R:
GCTCCAGCAAGGCAATGTCAT
Band lengths:
182-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]