BtaEX6102449 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019712 | ST14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:HGNC:11344]
Coordinates
chr29:36964493-36970222:+
Coord C1 exon
chr29:36964493-36964615
Coord A exon
chr29:36965309-36965495
Coord C2 exon
chr29:36969948-36970222
Length
187 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTCTGTCTCTCCCAGACT
3' ss Score
10.63
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGAAAGCCGTCCCCTGCACTGAACACACCCACCGCTGCCTCAACGGGCTCTGTGTGGACAAGAGCAACCCCCAGTGTGACGGGAACGAGGACTGCACTGATGGCTCGGATGAGAAGGACTGTG
Seq A exon
ACTGTGGGCGGCGGTCGTTCACCAGGCAGTCCCGGGTCGTCGGAGGTGAGAATTCAGACCAAGGCGAGTGGCCCTGGCAGGTGAGCCTCCATGCCCAGGGCCACGGCCACTTGTGCGGGGCCTCTCTCATCTCCCCCAGCTGGATGATATCTGCCGCACATTGCTTCGTCGATGACAGAGGATTCAG
Seq C2 exon
GTACTCGGAACACAGTGTGTGGACAGCCTTCCTGGGCCTGCATGACCAGAGCAAGCGCAACGCCCCGGGGGTTCAGGAGCGCGGGCTGCAGCGCATCATCAAGCACCCGTTCTTCAACGACTTCACCTTCGACTACGACATCGCGCTGCTGCAGCTGGACCGGCCGGTGGAGTACAGCGCCACCATCCGGCCCATCTGCCTGCCCGCGGCCGACTACACCTTCCCCACCGGCAAGGCCATCTGGGTCACCGGCTGGGGCCACACGCAGGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019712-'26-25,'26-24,27-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.175 C2=0.054
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.5)
A:
PF0008921=Trypsin=PU(21.3=79.4)
C2:
PF0008921=Trypsin=FE(39.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTCGGATGAGAAGGACT
R:
GGTGGGGAAGGTGTAGTCGG
Band lengths:
253-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]