DreEX0086562 @ danRer10
Exon Skipping
Gene
ENSDARG00000055644 | zgc:101788
Description
zgc:101788 [Source:ZFIN;Acc:ZDB-GENE-050320-109]
Coordinates
chr6:39100861-39102534:+
Coord C1 exon
chr6:39100861-39101009
Coord A exon
chr6:39102261-39102281
Coord C2 exon
chr6:39102366-39102534
Length
21 bp
Sequences
Splice sites
3' ss Seq
CTTTATTTCTGCCCTTTCAGGTT
3' ss Score
11.4
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TTGACAAGCACAACTGTATAAATGGGATTGTAGAAGATACAGAGGTTGAGAGACTGCCACTAGTAGACATTCTGCTAGCAAACAGAGGGACTGTGTGAAGATGTGGAGATTGACTTGTGCCACTTTGACCCTACTCATATGTGTTAAAG
Seq A exon
GTTCACTTTCTCAGTTGAATG
Seq C2 exon
TTTGTGGACAAGCCCCTCTGAACTCCCGTATTGTAGGGGGTGTAAATGCACCTGAGGGATCATGGCCTTGGCAGGTTAGTCTACAGAGCCCTAGGTATGGTGGTCATTTTTGCGGAGGCTCCCTGATCAGCAGTGAATGGGTGCTGACAGCTGCTCACTGTTTACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055644-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
60%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(19.9=80.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTGTGCCACTTTGACCC
R:
CCATGATCCCTCAGGTGCATT
Band lengths:
104-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]