RnoEX6046330 @ rn6
Exon Skipping
Gene
ENSRNOG00000033690 | Prss41
Description
serine protease 41 [Source:RGD Symbol;Acc:1584711]
Coordinates
chr10:13187136-13187461:-
Coord C1 exon
chr10:13187377-13187461
Coord A exon
chr10:13187254-13187280
Coord C2 exon
chr10:13187136-13187168
Length
27 bp
Sequences
Splice sites
3' ss Seq
GCCCTCTCACTTCCACCCAGGAT
3' ss Score
7.65
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTCTTTAGAGAGGCCGCCATGGGTGTACAGGGCCCAATGCTGCTACTGCTGCTGCTGGTGGTGTGCGTGATGCTGGGGGAGCCTG
Seq A exon
GATCGCGTGAAGAAAACCAGGCGGCAG
Seq C2 exon
GCCTCAAGAATACAGACATCAAGCTTCTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033690-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.300 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTTAGAGAGGCCGCCATG
R:
TTGAGAGAAGCTTGATGTCTGT
Band lengths:
118-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]