MmuEX0037450 @ mm9
Exon Skipping
Gene
ENSMUSG00000024114 | Prss41
Description
protease, serine, 41 [Source:MGI Symbol;Acc:MGI:1918253]
Coordinates
chr17:23980806-23981139:-
Coord C1 exon
chr17:23981044-23981139
Coord A exon
chr17:23980924-23980950
Coord C2 exon
chr17:23980806-23980838
Length
27 bp
Sequences
Splice sites
3' ss Seq
CTCACCTTATCTCCACCCAGGGT
3' ss Score
7.97
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTAAAGCTGGGCACCCGACTTCAGAGAGGCCGCCATGGGTATACAGGGCCCAGTGCTGCTGCTGCTGCTGCTGTGCGTGATGCTGGGGAAGCCTG
Seq A exon
GGTCACGTGAAGAAAGCCAGGCGGCAG
Seq C2 exon
ATCTCAAGAGCACAGACATCAAGCTTCTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024114-'1-1,'1-0,2-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.300 C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGACTTCAGAGAGGCC
R:
TGAGAGAAGCTTGATGTCTGTGC
Band lengths:
115-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types