MmuEX0037451 @ mm9
Exon Skipping
Gene
ENSMUSG00000024114 | Prss41
Description
protease, serine, 41 [Source:MGI Symbol;Acc:MGI:1918253]
Coordinates
chr17:23980409-23980950:-
Coord C1 exon
chr17:23980924-23980950
Coord A exon
chr17:23980806-23980838
Coord C2 exon
chr17:23980409-23980577
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTCCACTCCTCCCCCACAGATC
3' ss Score
12.7
5' ss Seq
CAAGTGACT
5' ss Score
1.62
Exon sequences
Seq C1 exon
GGTCACGTGAAGAAAGCCAGGCGGCAG
Seq A exon
ATCTCAAGAGCACAGACATCAAGCTTCTCTCAA
Seq C2 exon
TGCCCTGTGGCCGCCGGAATGACACTCGGTCCCGGATAGTGGGCGGGATAGAATCCATGCAAGGGCGCTGGCCGTGGCAGGCCAGCCTGCGCTTGAAGAAGTCCCACCGCTGCGGAGGGAGCCTTCTCAGCCGCCGCTGGGTGCTCACTGCTGCACACTGCTTTAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024114-'2-2,'2-1,3-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=0.027 C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(18.6=77.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGAAGAAAGCCAGGCG
R:
GGGACTTCTTCAAGCGCAGG
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: