MmuINT0127501 @ mm9
Intron Retention
Gene
ENSMUSG00000024114 | Prss41
Description
protease, serine, 41 [Source:MGI Symbol;Acc:MGI:1918253]
Coordinates
chr17:23980409-23980838:-
Coord C1 exon
chr17:23980806-23980838
Coord A exon
chr17:23980578-23980805
Coord C2 exon
chr17:23980409-23980577
Length
228 bp
Sequences
Splice sites
5' ss Seq
CAAGTGACT
5' ss Score
1.62
3' ss Seq
GTCTTATTTGTCTGTCCCAGTGC
3' ss Score
9.03
Exon sequences
Seq C1 exon
ATCTCAAGAGCACAGACATCAAGCTTCTCTCAA
Seq A exon
GTGACTGATGGGCTCTGTGGAGGGCTGGGTGTCTGTGAACCACGTGTGAAGGGTTTCTGCGCCATCTCCTGATCTCCTGCCTCTTCAACAAAACCCCAGGATACTGGAGGAAGGGGGGGGGGTGTACGGTTGCGTGGTTCTCCCCAGTTCCTCCCATACACGTGTACCCTAGGGATGCTATGGGCCTTCCTAGGCTGCTCAGCCATGTGTCTTATTTGTCTGTCCCAG
Seq C2 exon
TGCCCTGTGGCCGCCGGAATGACACTCGGTCCCGGATAGTGGGCGGGATAGAATCCATGCAAGGGCGCTGGCCGTGGCAGGCCAGCCTGCGCTTGAAGAAGTCCCACCGCTGCGGAGGGAGCCTTCTCAGCCGCCGCTGGGTGCTCACTGCTGCACACTGCTTTAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024114-Prss41:NM_027644:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.6=77.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAAGAGCACAGACATCAAGC
R:
GGCTGAGAAGGCTCCCTCC
Band lengths:
164-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: