RnoINT0118762 @ rn6
Intron Retention
Gene
ENSRNOG00000033690 | Prss41
Description
serine protease 41 [Source:RGD Symbol;Acc:1584711]
Coordinates
chr10:13186750-13187168:-
Coord C1 exon
chr10:13187136-13187168
Coord A exon
chr10:13186919-13187135
Coord C2 exon
chr10:13186750-13186918
Length
217 bp
Sequences
Splice sites
5' ss Seq
CAAGTGACT
5' ss Score
1.62
3' ss Seq
GTCTTATTTGTCTGTCCCAGTGC
3' ss Score
9.03
Exon sequences
Seq C1 exon
GCCTCAAGAATACAGACATCAAGCTTCTCTCAA
Seq A exon
GTGACTGATGGGCTCTGTGGACGGCTGGGTGTCTGCGAACCACGTGGGAAGGGTTCCTGCGCCATCTCCTGGCTCTTCAACAAAACGCCGGGATATTGGAGGGGGGCGGGGGTACGGTCGTATGGTGCTCCCCAGCTCCTCCCATAAACATGTACCCTAGGGGACCCTACGGGCCTTCCTCAGCTGCTCAGCCTTGTGTCTTATTTGTCTGTCCCAG
Seq C2 exon
TGCCGTGTGGCCGCCGGAATGACATTCGGTCCCGGATAGTGGGCGGGATAGAATCCGTGCGAGGGCGCTGGCCGTGGCAGGCCAGCCTGCGTTTGAGGAAGTTCCACCGCTGCGGAGGGAGCCTTCTCAGCCACCGATGGGTGCTTACTGCTGCACACTGCTTTAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033690:ENSRNOT00000007039:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.6=77.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCAAGAATACAGACATCAAGC
R:
GCAGTGTGCAGCAGTAAGC
Band lengths:
194-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]