MmuEX0037451 @ mm10
Exon Skipping
Gene
ENSMUSG00000024114 | Prss41
Description
protease, serine 41 [Source:MGI Symbol;Acc:MGI:1918253]
Coordinates
chr17:23843609-23843983:-
Coord C1 exon
chr17:23843957-23843983
Coord A exon
chr17:23843839-23843871
Coord C2 exon
chr17:23843609-23843610
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTCCACTCCTCCCCCACAGATC
3' ss Score
12.7
5' ss Seq
CAAGTGACT
5' ss Score
1.62
Exon sequences
Seq C1 exon
GGTCACGTGAAGAAAGCCAGGCGGCAG
Seq A exon
ATCTCAAGAGCACAGACATCAAGCTTCTCTCAA
Seq C2 exon
TG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024114-'2-2,'2-1,3-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=0.027 C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(18.6=77.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types