MmuEX6075549 @ mm10
Exon Skipping
Gene
ENSMUSG00000024114 | Prss41
Description
protease, serine 41 [Source:MGI Symbol;Acc:MGI:1918253]
Coordinates
chr17:23842245-23843871:-
Coord C1 exon
chr17:23843839-23843871
Coord A exon
chr17:23843442-23843610
Coord C2 exon
chr17:23842245-23842525
Length
169 bp
Sequences
Splice sites
3' ss Seq
GTCTTATTTGTCTGTCCCAGTGC
3' ss Score
9.03
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATCTCAAGAGCACAGACATCAAGCTTCTCTCAA
Seq A exon
TGCCCTGTGGCCGCCGGAATGACACTCGGTCCCGGATAGTGGGCGGGATAGAATCCATGCAAGGGCGCTGGCCGTGGCAGGCCAGCCTGCGCTTGAAGAAGTCCCACCGCTGCGGAGGGAGCCTTCTCAGCCGCCGCTGGGTGCTCACTGCTGCACACTGCTTTAGAAA
Seq C2 exon
GTACCTTGATCCAGAAAAGTGGACCGTCCAGCTTGGGCAGCTTACATCCAAGCCGTCTTACTGGAACAGGAAGGCCTATTCTGGACGGTACAGGGTAAAGGACATCATCGTAAACTCCGAAGACAAGCTGAAGTCCCATGACCTGGCCCTGCTGAGGCTGGCCTCCTCGGTCACCTACAACAAGGACATCCAGCCTGTCTGTGTGCAGCCTTCCACCTTTACGTCCCAGCACCAGCCCAGGTGCTGGGTGACCGGCTGGGGAGTCCTTCAGGAGGATTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024114_MULTIEX1-3/4=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.013 C2=0.003
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.6=77.2)
C2:
PF0008921=Trypsin=PU(47.9=95.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAGCACAGACATCAAGCT
R:
GGACGTAAAGGTGGAAGGCTG
Band lengths:
256-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types