MmuINT0127500 @ mm10
Intron Retention
Gene
ENSMUSG00000024114 | Prss41
Description
protease, serine 41 [Source:MGI Symbol;Acc:MGI:1918253]
Coordinates
chr17:23843839-23843983:-
Coord C1 exon
chr17:23843957-23843983
Coord A exon
chr17:23843872-23843956
Coord C2 exon
chr17:23843839-23843871
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTCCACTCCTCCCCCACAGATC
3' ss Score
12.7
Exon sequences
Seq C1 exon
GGTCACGTGAAGAAAGCCAGGCGGCAG
Seq A exon
GTGAGGAACCGTGGTCCCTGTGAGAAACACCTACCGAGGCCAGGCATAAAGAAGTCGCCTCATCTTTTCCACTCCTCCCCCACAG
Seq C2 exon
ATCTCAAGAGCACAGACATCAAGCTTCTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024114:ENSMUST00000024926:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCACGTGAAGAAAGCCAGG
R:
TGAGAGAAGCTTGATGTCTGTGC
Band lengths:
59-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types