HsaEX6041919 @ hg38
Exon Skipping
Gene
ENSG00000007038 | PRSS21
Description
protease, serine 21 [Source:HGNC Symbol;Acc:HGNC:9485]
Coordinates
chr16:2817180-2817966:+
Coord C1 exon
chr16:2817180-2817332
Coord A exon
chr16:2817430-2817456
Coord C2 exon
chr16:2817801-2817966
Length
27 bp
Sequences
Splice sites
3' ss Seq
TCACTTCTTGTCTCCCGCAGAGT
3' ss Score
12.22
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAGCTCCCACCCCGCCCCGCCCCCAGGGGGCGCCCCGGGCCCGGCGCGAGAGGAGGCAGAGGGGGCGTCAGGCCGCGGGAGAGGAGGCCATGGGCGCGCGCGGGGCGCTGCTGCTGGCGCTGCTGCTGGCTCGGGCTGGACTCAGGAAGCCGG
Seq A exon
AGTCGCAGGAGGCGGCGCCGTTATCAG
Seq C2 exon
GACCATGCGGCCGACGGGTCATCACGTCGCGCATCGTGGGTGGAGAGGACGCCGAACTCGGGCGTTGGCCGTGGCAGGGGAGCCTGCGCCTGTGGGATTCCCACGTATGCGGAGTGAGCCTGCTCAGCCACCGCTGGGCACTCACGGCGGCGCACTGCTTTGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007038-'0-4,'0-1,1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=0.396 C2=0.378
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008921=Trypsin=PU(18.3=78.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGGCTGGACTCAGGAAG
R:
GAATCCCACAGGCGCAGG
Band lengths:
124-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains