HsaINT1028226 @ hg38
Intron Retention
Gene
ENSG00000215148 | PRSS41
Description
protease, serine 41 [Source:HGNC Symbol;Acc:HGNC:30715]
Coordinates
chr16:2798959-2799569:+
Coord C1 exon
chr16:2798959-2799124
Coord A exon
chr16:2799125-2799285
Coord C2 exon
chr16:2799286-2799569
Length
161 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
CCTCTCTCCTTTTCTGCTAGGCA
3' ss Score
9.1
Exon sequences
Seq C1 exon
AGGCCTGCGGCCACCGGGAAATTCACGCGCTGGTGGCGGGCGGAGTGGAGTCCGCGCGCGGGCGCTGGCCATGGCAGGCCAGCCTGCGCCTGAGGAGACGCCACCGATGTGGAGGGAGCCTGCTCAGCCGCCGCTGGGTGCTCTCGGCTGCGCACTGCTTCCAAAA
Seq A exon
GTGAGTCTGGGGGGCGGCCGGGGCCTCAGACTTGCTAATGGCCTCCAGGATGAGCAAACAGTAGCCACCCAGCAGCTTGGCCTCAGGGACTGGGCCTCCAGCGTGCTCAGGCGGCCAGCCCCCTATTCCAAGGCTCCCCGCCCTCTCTCCTTTTCTGCTAG
Seq C2 exon
GCACTACTATCCCTCCGAGTGGACGGTCCAGCTGGGCGAGCTGACTTCCAGGCCAACTCCTTGGAACCTGCGGGCCTACAGCAGTCGTTACAAAGTGCAGGACATCATTGTGAACCCTGACGCACTTGGGGTTTTACGCAATGACATTGCCCTGCTGAGACTGGCCTCTTCTGTCACCTACAATGCGTACATCCAGCCCATTTGCATCGAGTCTTCCACCTTCAACTTCGTGCACCGGCCGGACTGCTGGGTGACCGGCTGGGGGTTAATCAGCCCCAGTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215148:ENST00000399677:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.5=78.6)
A:
NA
C2:
PF0008921=Trypsin=FE(39.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCGCACTGCTTCCAAAA
R:
GTGCACGAAGTTGAAGGTGGA
Band lengths:
255-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains