HsaALTD1044626-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000219073 | CELA3B
Description
chymotrypsin like elastase family member 3B [Source:HGNC Symbol;Acc:HGNC:15945]
Coordinates
chr1:21983694-21984331:+
Coord C1 exon
chr1:21983694-21983830
Coord A exon
chr1:21983831-21983903
Coord C2 exon
chr1:21984189-21984331
Length
73 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
GGTGCTTTTTATCGCTGCAGCCA
3' ss Score
6.36
Exon sequences
Seq C1 exon
CAATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGACGCCGTCCAGCTCGCCTCACTCCCTCCGGCTGGTGACATCCTTCCCAACGAGACACCCTGCTACATCACCGGCTGGGGCCGTCTCTATA
Seq A exon
GTACGTGCTGACTTCTCTAGCTGGCCACAGGGACAGTGGCAGAAAGACAGGGCCTGGGGGCTGCAGGTTGAAG
Seq C2 exon
CCAACGGGCCACTCCCAGACAAGCTGCAGGAGGCCCTGCTGCCGGTGGTGGACTATGAACACTGCTCCAGGTGGAACTGGTGGGGTTCCTCCGTGAAGAAGACCATGGTGTGTGCTGGAGGGGACATCCGCTCCGGCTGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000219073-9-8,10-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGACATCCTTCCCAACG
R:
CAGCACACACCATGGTCTTCT
Band lengths:
177-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains