HsaALTD1044626-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000219073 | CELA3B
Description
chymotrypsin like elastase family member 3B [Source:HGNC Symbol;Acc:HGNC:15945]
Coordinates
chr1:21983694-21984331:+
Coord C1 exon
chr1:21983694-21983830
Coord A exon
NA
Coord C2 exon
chr1:21984189-21984331
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATAGTACGT
5' ss Score
6.05
3' ss Seq
GGTGCTTTTTATCGCTGCAGCCA
3' ss Score
6.36
Exon sequences
Seq C1 exon
CAATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGACGCCGTCCAGCTCGCCTCACTCCCTCCGGCTGGTGACATCCTTCCCAACGAGACACCCTGCTACATCACCGGCTGGGGCCGTCTCTATA
Seq A exon
NA
Seq C2 exon
CCAACGGGCCACTCCCAGACAAGCTGCAGGAGGCCCTGCTGCCGGTGGTGGACTATGAACACTGCTCCAGGTGGAACTGGTGGGGTTCCTCCGTGAAGAAGACCATGGTGTGTGCTGGAGGGGACATCCGCTCCGGCTGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000219073-9-8,10-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.0=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGACATCCTTCCCAACG
R:
CAGCACACACCATGGTCTTCT
Band lengths:
177-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains