MmuALTD1009417-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000023433 | Cela3b
Description
chymotrypsin-like elastase family, member 3B [Source:MGI Symbol;Acc:MGI:1915118]
Coordinates
chr4:137423247-137423981:-
Coord C1 exon
chr4:137423845-137423981
Coord A exon
NA
Coord C2 exon
chr4:137423247-137423389
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCAGTACGT
5' ss Score
7.19
3' ss Seq
AATGCTCTCTGTCTCCCCAGCCA
3' ss Score
9.5
Exon sequences
Seq C1 exon
CAATGACATCGCCCTGGTCAAGCTCTCAAGAAGTGCCCAGCTGGGAGATGCAGTCCAGCTTGCCTGCCTCCCTCCTGCTGGTGAAATCCTACCCAACGGAGCACCCTGTTACATCAGCGGCTGGGGCCGGCTCTCCA
Seq A exon
NA
Seq C2 exon
CCAATGGACCTCTGCCAGACAAGCTGCAGCAGGCCTTGCTGCCTGTGGTGGACTATGAACACTGCTCCAGGTGGAACTGGTGGGGCTTGTCTGTGAAGACGACCATGGTGTGCGCCGGCGGCGATATCCAGTCTGGCTGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023433-6-6,7-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGACATCGCCCTGGTCAA
R:
CAGCCAGACTGGATATCGCC
Band lengths:
276-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types