HsaALTD1044638-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000219665 | CTD-2006C1.2
Description
NA
Coordinates
chr19:11987723-12001822:+
Coord C1 exon
chr19:11987723-11987823
Coord A exon
NA
Coord C2 exon
chr19:12001774-12001822
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTCCTGGTTCTGTATTTTAGGAA
3' ss Score
11.02
Exon sequences
Seq C1 exon
CCCTCCTCCGTAGCTTTTGTCTCTCTATTGCCTGCGCCGTGTCCTGGACTGCTCACGGGAGTTCTGCAGGAGACGCCGGAATATCTGGAAGCTGAAAAATG
Seq A exon
NA
Seq C2 exon
GAAATAAATGGAAAGACCAGAATATTGAAGATCACTACAGAAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000219665-0-9,1-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCTCTCTATTGCCTGCGC
R:
TGATCTTCAATATTCTGGTCTTTCCA
Band lengths:
119-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains