HsaEX0017732 @ hg38
Exon Skipping
Gene
ENSG00000219665 | CTD-2006C1.2
Description
NA
Coordinates
chr19:11987617-12003811:+
Coord C1 exon
chr19:11987617-11987823
Coord A exon
chr19:12001774-12001822
Coord C2 exon
chr19:12003392-12003811
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTCCTGGTTCTGTATTTTAGGAA
3' ss Score
11.02
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AATCCGCCGGAAGGAGGGCGCAGCATTGCCGGTCTTCTCATTGCCTGGCTGCTAGAGGAAACCCGAAGTCGGGATTCTTTCTTTCCTGCTCTGAGAGGGACCAGGTCCCTCCTCCGTAGCTTTTGTCTCTCTATTGCCTGCGCCGTGTCCTGGACTGCTCACGGGAGTTCTGCAGGAGACGCCGGAATATCTGGAAGCTGAAAAATG
Seq A exon
GAAATAAATGGAAAGACCAGAATATTGAAGATCACTACAGAAATCTAAG
Seq C2 exon
GGTCAGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAAGCAGAGGCAGTTGGATCACTTGAACCTGGGAGGCGTTCTGGAGGTCAGGAGTTCGAGACCAGCTTGGCCAACATGGTGAAACCCTGTGTCTGCTAAAAATACAAAAATTAGCCGGGCCTCATGGCACATGCCTGTAATCCCAGCTACTCTGGAGGCTGAAGCAGGAGAATCGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCACGCCACTGCTTCTTGCTTTAAAAGAAGAGTAAAGACAAGAGTGTTGGACCAGTATTGCAGTTCTGTAGTATCATTTCTTATAAAAAACAAAACAACAATAATTTATCAAAATTGGCATATAAAGACTGACAACATTCTAATAAAGGCACAAATTTCTTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000219665-'0-10,'0-9,8-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTCCTCCGTAGCTTTTGT
R:
GCTGGGATTACAGGTGTGAGC
Band lengths:
137-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development