HsaEX0017732 @ hg19
Exon Skipping
Gene
ENSG00000219665 | CTD-2006C1.2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F2Z2P1]
Coordinates
chr19:12098432-12138009:+
Coord C1 exon
chr19:12098432-12098638
Coord A exon
chr19:12112589-12112637
Coord C2 exon
chr19:12137009-12138009
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTCCTGGTTCTGTATTTTAGGAA
3' ss Score
11.02
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AATCCGCCGGAAGGAGGGCGCAGCATTGCCGGTCTTCTCATTGCCTGGCTGCTAGAGGAAACCCGAAGTCGGGATTCTTTCTTTCCTGCTCTGAGAGGGACCAGGTCCCTCCTCCGTAGCTTTTGTCTCTCTATTGCCTGCGCCGTGTCCTGGACTGCTCACGGGAGTTCTGCAGGAGACGCCGGAATATCTGGAAGCTGAAAAATG
Seq A exon
GAAATAAATGGAAAGACCAGAATATTGAAGATCACTACAGAAATCTAAG
Seq C2 exon
GATGAAATCAACAGCCAATCTGGGTGCCATTGAGACATCTAAAGCCTTACTATGAGCCAGATACCCAGGAAGAGGTTTTGGGAGGATCCCAAAGACTCCCTGGTTGCAGCCATGTCAAGACTGATGCTGAGGAGGACCCCAACTGTCACGAGCAACAACTGCCTGGGGACAGATCAAGAAGCTGTCACAGATGGCAGAGAAAAACCTGAGAAAAGCGGGACAACCAGTCACAATGAGTAATTTAATGATAGCTATGACAGTGGTGATCACCATTGCCATGAGTATTCCTTCAACAAGGGCTGACACAGAGAACAATTACACTTATTGGGCATATTTATCAATCTTGGCTGGCAATAATGCCTGGATGTGATCACTCTATGACACAGTTACACATGCTTTCTGGTCTCAGTATTTACCATAATAATCTGCTCCTATAATTGAGGCATACTGCCCTCAAAAAACTATTTGTAAACAGGATTGGACCTGGTCAGAAAAAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000219665-'0-5,'0-2,3-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGACGCCGGAATATCTG
R:
CCAGGGAGTCTTTGGGATCCT
Band lengths:
138-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)